Author Topic: Ergot Culture Medium for Alkaloid Production (C. Purpurea & Paspali)  (Read 1616 times)

overunity33

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Re: Ergot Culture Medium for Alkaloid Production (C. Purpurea & Paspali)
« Reply #40 on: March 03, 2011, 05:07:59 PM »
So is buying a 15k$ fermentor/bioreactor suspicious? Just curious if anyone is on to this yet.


Well buying one is suspicious but not for anything related to drugs... this is where you have to watch out in this day and age.  Many parts of this hobby can overlap with things that will inact the various nasties of the patriot act.

Vesp

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Re: Ergot Culture Medium for Alkaloid Production (C. Purpurea & Paspali)
« Reply #41 on: March 03, 2011, 09:44:24 PM »
Perhaps it would be best to still focus on maybe 5 liter cultures thus far.
In fact, what is the best "structure" for highest alkaloid levels?
Most all of them that I read use a Erlenmeyer flask on a shaker, and often it is relatively large compared to the culture, such as 50mls of culture to 250ml flask.

What sort of reaction vessels are you guys thinking would be good?

I have seen polypropylene 5 gallon buckets that hermetically, but it isn't like it would be easy to sterilize that, though, smaller polypropylene buckets could be obtained, perhaps?

They also sell polypropylene gallon jugs for water in certain places, but I get the idea that ventilation will become an issue, competing with batch size and autoclave-ability. Even one liter starts to seem a bit tricky to do...
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overunity33

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Re: Ergot Culture Medium for Alkaloid Production (C. Purpurea & Paspali)
« Reply #42 on: March 03, 2011, 10:49:56 PM »
The bigger bioreactors are just SS tanks with a stirrer and sterile air input.  I think you would do fine with a 5 gallon container and a pump that was 2-5gallons air/minute.  You can use plastic/glass carboys if you UV sterilise them and then pump cool, sterile nutrient solution into them...

Vesp

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Re: Ergot Culture Medium for Alkaloid Production (C. Purpurea & Paspali)
« Reply #43 on: March 03, 2011, 10:54:45 PM »
Seems like it would be hard to do all of that under sterile conditions. Might be more ideal to have many small reaction vessels that can be autoclaved with the nutrient solution already, and than have them good to go for the next step, being inoculation.
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overunity33

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Re: Ergot Culture Medium for Alkaloid Production (C. Purpurea & Paspali)
« Reply #44 on: March 04, 2011, 12:34:41 AM »
a bioreactor doesn't have to be 100% sterile... You have a solution with a high osmotic pressure, many compounds that would inhibit growth in other organisms and you are inoculating it with seed cultures of a fungus which is notorious for putting out secondary metabolites, further pissing anything that tries to grow in there off... The seed cultures should be sterilised totally tho...

Notice how on the shroomery nobody sterilises their bulk substrates?

Vesp

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Re: Ergot Culture Medium for Alkaloid Production (C. Purpurea & Paspali)
« Reply #45 on: March 04, 2011, 02:07:19 AM »
Good points, I just don't like the idea of having unwanted bacteria/yeast in liquid cultures. However their growth would be really slow as you mentioned a lot of good points.
Though, it isn't quite the same as a bulk substrate for several reasons, as the mycelium here isn't going to do much more vegetative growth, as mycelium does in bulk substrates, in addition to it being liquid - liquid allows for contaminants to travel/spread through out the whole thing way faster.

Probably making it so it is "essentially" sterile might do the trick.
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solidstone

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Re: Ergot Culture Medium for Alkaloid Production (C. Purpurea & Paspali)
« Reply #46 on: March 04, 2011, 02:10:56 AM »
why not chemically sterilize it?  hydrogen peroxide... heat to release hydrogen and oxygen.

Vesp

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Re: Ergot Culture Medium for Alkaloid Production (C. Purpurea & Paspali)
« Reply #47 on: March 04, 2011, 06:20:14 AM »
I used to use that for agar, than one time it turned brown and never solidifed, other times it had inhibited growth. It seems very hard to get it so the peroxide is destroyed without it destroying something else..- at least with agar, with this it could work much better.

Also it still requires heat. However perhaps adding an insoluble peroxide decomp. catalyst (MnO2?) might be worth considering.

I guess just a big 5 liter flask would do the trick for at least 1 liter of solution though, thats probably the best starting point I guess.. That can easily bring things up to boiling, and if it were pre-sterilized, you'd only really have to worry about endospores enter the solution than germinating.


Also could do stuff like boil it, incubate it, than boil it again - this causes the often temperature resistant endospores to germinate - going into a vegetative growth, and than kills those as they are susceptible to death by heat. I forget what this is called, something that starts with a "T"

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overunity33

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Re: Ergot Culture Medium for Alkaloid Production (C. Purpurea & Paspali)
« Reply #48 on: March 04, 2011, 04:46:15 PM »
h2o2 wouldnt be a good idea like vesp said.. Vesp: are you trying to use that 5L flask on a shaker?  Why not use 4L in a 5L flask with aeration instead of 1L in a 5L and having to get a huge orbital shaker?

Boiling it, cooling, boiling, etc i think is referred to as fractional sterilization.. should work very well in this situation.  Honestly if you use pure reagents and fresh reverse osmosis water (with a brand new filter, organisms are known to grow in the filters) you may not even have to sterilise at all since you should be inoculating it with at least 10% of its volume in seed culture.  I know its bad practice but this process is not as touchy as it seems.. somehow this fungus in the wild manages to land on a plant covered in a ton of other organisms, grow and fight off anything else before it takes the plant over... this fungus is very "aggressive", will crawl right out of petri dishes if the oxygen becomes deprived...

Vesp

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Re: Ergot Culture Medium for Alkaloid Production (C. Purpurea & Paspali)
« Reply #49 on: March 04, 2011, 09:14:26 PM »
Oh yep, called tyndallization!

Quote
Fractional sterilization or tyndallization is a method used to destroy bacteria and endospores in preparation of grain spawn(rye, wheat, millet, birdseed...) and agar, which requires no pressure cooker.
In this case, the jars fitted with a filter disc or a polyfill lid filter are boiled or steamed at 212°F (100°C) for 30 min in a pot with lid, three days in a row. Between the boiling steps the jars are kept warm, around 30°C(but room temperature will work too), to allow the remaining endospores to germinate.
The basic principle behind this method is that any resistant endospores will germinate after the first heating and therefore be susceptible to killing during the second and third heating.

Timetable of the tyndallization (=fractional sterilisation) process

1) Steam heating to 100 °C for 30 min
Vegetative cells are destroyed but endospores survive

2) Incubate at 30°C-37°C overnight
Most bacterial endospores germinate

3) Second heat treatment, 100 °C, 30 min
Germinated endospores are killed.

4) Second incubation at 30°C-37 °C overnight
Remaining endospores germinate

5) Third heat treatment, 100 °C, 60 min
Last remaining germinated endospores are killed

It might not need to be totally sterile, but I bet bacteria can out grow mycelium in a culture that is meant not for the mycelium to grow, but to produce alkaloids.
Could be a problem easily at day 10 at ideal temps and aeration.

Good idea with the 4/5 or whatever in addition to added bubbles - probably would be pretty easy to do with a fish air pump, a long tube of sterile cotton/polyfill, and an air bubbler.

In addition a magnetic stirrer might help every now and than to kick up mycelium and mix air bubbles better.

Imagine this:
[youtube]http://www.youtube.com/watch?v=n7cKbIxnTdA[/youtube]

Though, that much agitation isn't good I wouldn't think... Does anyone have papers on alkaloid content vs oxygen levels vs agitation, etc?

I know more oxygen the better, but the agitation might ruin it and you'd need to find a "happy" middle ground.
 
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Bluebottle

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Re: Ergot Culture Medium for Alkaloid Production (C. Purpurea & Paspali)
« Reply #50 on: March 08, 2011, 11:39:30 PM »
Among other fascinating information, according to the attached paper:

"Interestingly, the opposite effect could be observed by the application of HATis (synthetical inhibitors vv51 and vv56 as well as the naturally derived compound garcinol from G. indica fruit rind): all cultures analysed showed deep blue staining indicating massive production of ergot alkaloids (Fig. 6) also independent of the culture conditions (induced/non-induced)." p. 1827

Short chain fatty acids would inhibit alkaloid production if I understood correctly.

http://en.wikipedia.org/wiki/Garcinia_indica

The genetic engineers might also find this paper interesting. I only got around to reading it today.
« Last Edit: March 08, 2011, 11:41:33 PM by Bluebottle »
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Vesp

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Re: Ergot Culture Medium for Alkaloid Production (C. Purpurea & Paspali)
« Reply #51 on: March 09, 2011, 02:02:12 AM »
Interesting, so garicinol and those others (w51, w56) induce alkaloid formation?
I only had time to skim it, I'll look more into that later - but those seem unpractical to use I suppose.
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Vesp

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Re: Ergot Culture Medium for Alkaloid Production (C. Purpurea & Paspali)
« Reply #52 on: March 09, 2011, 11:39:24 PM »
Quote
Interestingly, the opposite effect could be observed by the
application of HATis (synthetical inhibitors vv51 and vv56 as well
as the naturally derived compound garcinol from G. indica fruit
rind): all cultures analysed showed deep blue staining indicating
massive production of ergot alkaloids (Fig. 6) also independent of
the culture conditions (induced/non-induced).


So it sounds like the three HAT inhibitors they tested increased alkaloid production in a culture that other wise does not produce alkaloids. It seems like if we were lucky, the easily available EGCG would work as well:

Epigallocatechin-3-gallate, a histone acetyltransferase inhibitor, inhibits EBV-induced B lymphocyte transformation via suppression of RelA acetylation.
Quote
During our ongoing screening study to identify natural compounds with histone acetyltransferase inhibitor (HATi) activity, we identified epigallocatechin-3-gallate (EGCG) as a novel HATi with global specificity for the majority of HAT enzymes but with no activity toward epigenetic enzymes including HDAC, SIRT1, and HMTase

In addition to curcumin:

Curcumin is an inhibitor of p300 histone acetylatransferase.
Quote
In addition to inducing p300 degradation curcumin inhibited the acetyltransferase activity of purified p300 as assessed using either histone H3 or p53 as substrate.

I am not sure if all HATi's effect all the genes needed, but it might be worth looking into, especially considering that 50-90% EGCG is easily available as a health supplement. This should also get rid of the need for a mutant alkaloid producing strain as it activates the genes - and likely you would not need a perfect nutrient solution either.

Anyone have any comments on this? It looks great!!
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overunity33

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Re: Ergot Culture Medium for Alkaloid Production (C. Purpurea & Paspali)
« Reply #53 on: March 09, 2011, 11:49:20 PM »
I am very interested in this... I don't have the knowledge of biochemistry or genetics to make any conclusions from this research except that its a potential game changer... Can anyone clarify which compounds would work for our needs?  Keeping my ears percked up for this one...

overunity33

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Re: Ergot Culture Medium for Alkaloid Production (C. Purpurea & Paspali)
« Reply #54 on: March 10, 2011, 12:04:53 AM »
It says garicinol was used at 50ug... what was the total size of the solution it was added to?  Is 1ml assumed?

Vesp

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Re: Ergot Culture Medium for Alkaloid Production (C. Purpurea & Paspali)
« Reply #55 on: March 10, 2011, 12:20:30 AM »
From all the other ergot files I have, they always specify it in ug/ml - this doesn't seem too but it does say ug as a concentration. It makes sense to me that it would be ug/ml - being 50mg per liter, that isn't bad at all. Though, if you were to buy the pure chemical, it would be very expensive. Hopefully other more OTC/cheap chemicals, such as curcumin or EGCG work as well. Though, that might be wishful thinking.

Just as an emphasis:
Quote
Can anyone clarify which compounds would work for our needs?
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jon

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Re: Ergot Culture Medium for Alkaloid Production (C. Purpurea & Paspali)
« Reply #56 on: March 10, 2011, 01:31:20 AM »
you know the more stuff you add the harder it becomes to pin down what is increasing production and what is not.
and the observation that tap water did actually increase yeilds was what drove the study of what micronutrients are affecting this change.
i would keep it as simple as possible.
the so called **8 salt broth** if i recall from my studies
arcemone spells this out pretty well.

Vesp

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Re: Ergot Culture Medium for Alkaloid Production (C. Purpurea & Paspali)
« Reply #57 on: March 10, 2011, 03:51:05 AM »
Well, you keep it as simple as possible. :)

I am going to explore all the options and see what sort of gems can be found.. IMO it is important to look at everything and evaluate the situation.. plus - whats wrong with aiding everyone with tons of information?

While life never seems to work this way, perhaps any crude nutrient solution, some cheap 90% EGCG, and any wild strain or worse of a ergot culture could be mixed up to have some high yields of ergot alkaloids. You never know, and its all about the possibilities...
It isn't like arcemone knew about the garcinol, or even had all the references.

Perhaps just going the extra mile could really put a little umph in the whole ordeal...
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solidstone

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Re: Ergot Culture Medium for Alkaloid Production (C. Purpurea & Paspali)
« Reply #58 on: March 10, 2011, 05:00:39 AM »
could always do a variable matrix approach...  set up an ungodly number of tubes.  One row for each variable, then each variable at varying concentrations.  Take results, parse out the useless bits and record.  Use the most significant variables to forge forward, and repeat combining the most effective variable at its most effective concentration with the others, again throw at the junk and tweak.

theres got to be a systematic way to pin it down which isn't an absolute headache.

and it's times like these that I wish I knew some aspiring bioinformatics whiz.

Vesp

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Re: Ergot Culture Medium for Alkaloid Production (C. Purpurea & Paspali)
« Reply #59 on: March 10, 2011, 05:23:29 AM »
I think the real probably would be to do this cheaply, and "semi-quantitative" - it would be very very hard to determine after a certain point which solution had the most ergot alkaloids in it using something as simple as the Van Urk...


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